PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002639.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 440aa    MW: 47023.4 Da    PI: 9.5456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002639.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05204226223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +C++Cg+ Fs ++  ++H  + H
  Itr_sc002639.1_g00005.1 204 TCHKCGEQFSKWDAVESHHLSqH 226
                              8*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280205226IPR007087Zinc finger, C2H2
SuperFamilySSF563992.11E-24228439No hitNo description
Gene3DG3DSA:3.90.228.101.8E-12233437IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPAAVWFSLK KSLNCRSEVG EVHDPNYGGG RNLGKISTST RKSTTIRSGC SRSIANLKDV  60
VIHGSKRHTE NPQLQSPRSI GSSELLNPIV HEVVLNNSTC ELKITSYPFQ DGGGNGCGGA  120
SGGGGGSGSP FVGTLKPGTP GPGGHQVAPS KRPGGLGSPM RIGSSGSLSK RTGSGFGGIV  180
VRPRPRPRPK PNCGGDYNGF QALTCHKCGE QFSKWDAVES HHLSQHAVTQ LVEGDSSRNI  240
VEMICRTSWA TKSDNTNNCN GIERILKVHN MQKTLAEFEE YRERVKIKAS KLAKKHARCL  300
ADGNELLRFH GTTVECNLGA NDSSSLCTSE KCNVCQILRR GFAIKKEING GVGVFTASTS  360
NRALETIETS CGNQAKRKAL IVCRVIAGRV HRPLENVEEL AGQSGFDSLA GKVGLYSNVE  420
ELFLLDPRAL LPCFVVICKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365876.10.0PREDICTED: uncharacterized protein LOC102601024
TrEMBLM1BYS00.0M1BYS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-147C2H2 family protein